• M.A. Remli, M.S. Mohamad, S. Deris, A.A. Samah, S. Omatu, J.M. Corchado. Cooperative Enhanced Scatter Search With Opposition-Based Learning Schemes For Parameter Estimation In High Dimensional Kinetic Models of Biological Systems. Expert Systems With Applications, Elsevier. (Accepted). (IF: 3.928).

  • M.A. Remli, M.S Mohamad, S. Deris, A.A. Samah, R. Sinnott, S. Napis. An Improved Scatter Search Algorithm for Parameter Estimation in Large-Scale Kinetic Models of Biochemical Systems. Current Proteomics. Bentham Science. (Accepted). (IF: 0.6).

  • N.A.B. Aziz, Z. Ibrahim, M. Mubin, S.W. Nawawi, M.S. Mohammad. Improving Particle Swarm Optimization via Adaptive Switching Asynchronous-Synchronous Updates. Applied Soft Computing, Vol. 72, pp.298-311, (2018), Elsevier. (IF: 3.907).

  • A.G. Briones, D.D.L. Prieta, M.S. Mohamad, S. Omatu, J.M. Corchado. Multi-Agent Systems Applications in Energy Optimization Problems: A State of The Art Review. Energies, Vol. 8(11), No. 1928, pp.1-28, (2018), MDPI. (IF: 2.676).

  • S.K. Loh, S.T. Low, L.E. Chai, W.H. Chan, M.S. Mohamad, S. Deris, Z. Ibrahim, S. Kasim, Z.A. Shah, H.M. Jamil, Z. Zakaria, S. Napis. A Review of Computational Approaches to Predict Gene Functions. Current Bioinformatics, Vol. 13, No. 4, pp.373-386, (2018), Bentham Science. (IF: 0.54).

  • S. Fotoohifiroozabadi, M. S. Mohamad, S. Deris. NAHAL-Flex: A Numerical and Alphabetical Hinge Detection Algorithm for Flexible Protein Structure Alignment. IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 15, No.3, pp.934-943, (2018), IEEE Press. (IF: 1.955).

  • N.H.A Aziz, Z. Ibrahim, N.A.A. Aziz, M.S. Mohamad, J. Watada. Single-solution Simulated Kalman Filter algorithm for global optimisation problems. Sādhanā, Vol. 43, No. 7, pp.1-15, (2018), Springer. (IF: 0.592).

  • C.S. Seah, S. Kasim, MFM. Fudzee, J.M.L.T Ping, M.S. Mohamad, R.R. Saedudin, M.A. Ismail. An Enhanced Topologically Significant Directed Random Walk in Cancer Classification using Gene Expression Datasets. Saudi Journal of Biological Sciences, Vol. 24, No. 8, pp.1828-1841, (2017), Elsevier. (IF: 2.564).

  • A.M. Ismail, M.S. Mohamad, H.A. Majid, K.H. Abas, S. Deris, N. Zaki, S.Z.M. Hashim, Z. Ibrahim, M.A. Remli. An Improved Hybrid of Particle Swarm Optimization and the Gravitational Search Algorithm To Produce A Kinetic Parameter Estimation of Aspartate Biochemical Pathways. Biosystems, Vol. 162, pp.81-89, (2017), Elsevier. (IF: 1.652).

  • T.W. Shi, W.S. Kah, M.S. Mohamad, K. Moorthy, S. Deris, M.F. Sjaugi, S. Omatu, J.M. Corchado, S. Kasim. A Review Of Gene Selection Tools In Classifying Cancer Microarray Data. Vol. 12, No. 3, pp.202-212, (2017), Current Bioinformatics. Bentham Science. (IF: 0.770).

  • M.A. Remli, M.S Mohamad, S. Deris, S. Napis, R. Sinnott, M.F. Sjaugi. Metaheuristic Optimization for Parameter Estimation in Kinetic Models of Biological Systems - Recent Development and Future Direction, Current Bioinformtics, Vol. 12, No. 4, pp.286-295, (2017), Bentham Science. (IF: 0.770).

  • M.A. Remli, M.S. Mohamad, S. Deris, S. Omatu, J.M. Corchado. An Enhanced Scatter Search with Combined Opposition-Based Learning for Parameter in Large-Scale Kinetic Models of Biochemical Systems. Engineering Applications of Artificial Intelligence, Vol. 62, pp.164-180, (2017), Elsevier. (IF: 2.368).

  • S. Fotoohifiroozabadi, M. S. Mohamad, S. Deris. Samira-VP: A Simple Protein Alignment Method with Rechecking the Alphabet Vector Positions. Journal of Bioinformatics and Computational Biology, Vol. 15, No.2, pp.1750004-24pages, (2017), World Scientific. (IF: 0.785).

  • W.H. Chan, M.S. Mohamad, S. Deris, N. Zaki, S. Kasim, S. Omatu, J.M. Corchado, H.A. Ashwal. Identification of Informative Genes and Pathways using an Improved Penalized Support Vector Machine with a Weighting Scheme, Computers in Biology and Medicine. Vol. 77, pp. 102-115, (2016), Elsevier. (IF: 1.521).

  • L.S. Yi, T.L. Chin, M.S. Mohamad, S. Deris, S. Subair, Z. Ibrahim, A Review on Metabolic Analysis in Biology Production, Mini-Review in Organic Chemistry, Vol. 12, No. 6, pp. 506-523, (2015) Bentham Science. (IF: 1.042).

  • C.L. Koo, M.J. Liew, M.S. Mohamad, A.H.M. Salleh, S. Deris, Z. Ibrahim, B. Susilo, Y. Hendrawan, A.K. Wardani, Software for Detecting Gene-Gene Interactions in Genome Wide Association Studies, Biotechnology and Bioprocess Engineering, Vol. 20, No. 4, pp. 662-676, (2015), Springer. (IF: 1.113).

  • A.H.M. Salleh, M.S. Mohamad, S. Deris, S. Omatu, F. Fdez-Riverola, J.M. Corchado, Gene Knockout Identification for Metabolite Production Improvement Using a Hybrid of Genetic Ant Colony Optimization and Flux Balance Analysis, Biotechnology and Bioprocess Engineering, Vol. 20, No. 4, pp. 685-693, (2015), Springer. (IF: 1.113).

  • P.S. Chua, A.H.M. Salleh, M.S. Mohamad, S. Deris, S. Omatu, M. Yoshioka, Identifying a Gene Knockout Strategy Using a Hybrid of Bat Algorithm and Flux Balance Analysis to Enhance the Production of Succinate and Lactate in Escherichia Coli, Biotechnology and Bioprocess Engineering, Vol. 20, No. 2, pp. 349-357, (2015), Springer. (IF: 1.113).

  • M.A. Ismail, S. Deris, M.S. Mohamad, A. Abdullah, A Newton Cooperative Genetic Algorithm Method for In Silico Optimization of Metabolic Pathway Production, PLoS ONE, Vol. 10, No. 5, (2015), ID e0126199, Public Library of Science. (IF: 3.534).

  • S.J. Lu, F.F.M. Shah, M.S. Mohamad, K. Moorthy, S. Deris, Z. Zakaria, S. Napis, A Review on Bioinformatics Enrichment Analysis Tools towards Functional Analysis of High Throughput Gene Set Data, Current Proteomics, Vol. 12, No. 1, pp. 14-27, (2015), Bentham Science. (IF: 0.44).

  • A.H.M. Salleh, M.S. Mohamad, S. Deris, R.M. Illias, Metabolites Production Improvement by Identifying Minimal Genomes and Essential Genes Using Flux Balance Analysis, International Journal of Data Mining and Bioinformatics (IJDMB), Vol. 12, No. 1, pp. 85-99, (2015), Inderscience. (IF: 0.655).

  • S.K. Wong, K. Moorthy, M.S. Mohamad, Biological Analysis of Microarray Data Using Orthogonal Forward Selection with a Clustering Approach, Journal of Biological Systems, Vol. 23, No. 2, pp. 275-288, (2015), World Scientific Publishing. (IF: 0.955).

  • Y.W. Choon, M.S. Mohamad, S. Deris, C.K. Chong, S. Omatu, J.M. Corchado, Gene Knockout Identification Using an Extension of Bees Hill Flux Balance Analysis, BioMed Research International, Vol. 2015, ID 124537, 10 pages, (2015), Hindawi. (IF: 2.706).

  • I.J. Aliaga, V. Vera, J.F. De Paz, A.E. Garcia, M.S. Mohamad, Modelling the Longevity of Dental Restorations by Means of a CBR System, BioMed Research International, Vol. 2015, ID 540306, 10 pages, (2015), Hindawi. (IF: 2.706).

  • P.W. Tang, Y.W. Choon, M.S. Mohamad, S. Deris, S. Napis, Optimising the Production of Succinate and Lactate in Escherichia Coli Using a Hybrid of Artificial Bee Colony (ABC) Algorithm and Minimization of Metabolic Adjustment, Journal of Bioscience and Bioengineering, Vol. 119, No. 3, pp. 363-368, (2015), Elsevier. (IF: 1.737).

  • C.K. Chong, M.S. Mohamad, S. Deris, M.S. Shamsir, Y.W. Choon, L.E. Chai, A Review on Modelling Methods, Pathway Simulation Software and Recent Development on Differential Evolution Algorithms for Metabolic Pathways in Systems Biology, Current Bioinformatics, Vol. 9, No. 5, pp. 509-521, (2014), Bentham Science. (IF: 1.726).

  • S.J. Lu, A.H.M. Salleh, M.S. Mohamad, S. Deris, S. Omatu, M. Yoshioka, Identification of Gene Knockout Strategies using a Hybrid of an Ant Colony Optimization Algorithm and Flux Balance Analysis to Optimize Microbial Strains, Computational Biology and Chemistry, Vol. 53, Part B, (2014), pp. 175-183, Elsevier Limited. (IF: 1.595).

  • C.S. Tan, W.S. Ting, M.S. Mohamad, W.H. Chan, S. Deris, Z.A. Shah, A Review of Feature Extraction Software for Microarray Gene Expression Data, BioMed Research International, Vol. 2014, ID 213656, 15 pages, (2014), Hindawi. (IF: 2.706).

  • Adam, M.I. Shapiai, M. Mubin, M.Z.M. Tumari, M.S. Mohamad, Feature Selection and Classifier Parameters Estimation for EEG Signals Peak Detection Using Particle Swarm Optimization, The Scientific World Journal, Vol. 2014, ID 973063, 13 pages, (2014), Hindawi. (IF: 1.219).

  • S.J. Lu, F.F.M. Shah, M.S. Mohamad, N.L. Hamran, A.H.M Salleh, S. Deris, H. Alashwal, Database and Tools for Metabolic Network Analysis, Biotechnology and Bioprocess Engineering, Vol. 19, No. 4, (2014), pp. 568-585, Springer. (IF: 1.22).

  • L.E. Chai, M.S. Mohamad, S. Deris, C.K. Chong, Y.W. Choon, S. Omatu, Current Development and Review of Dynamic Bayesian Network-Based Methods for Inferring Gene Regulatory Networks from Gene Expression Data, Current Bioinformatics, Vol. 9, No. 5, (2014), pp. 531-539, Bentham Science. (IF: 1.726).

  • Y.W. Choon, M.S. Mohamad, S. Deris, R.M. Illias, C.K. Chong, L.E. Chai, S. Omatu, J.M. Corchado, Differential Bees Flux Balance Analysis with OptKnock for In Silico Microbial Strains Optimization, PLoS ONE, Vol. 9, No. 7, (2014), ID e102744, Public Library of Science. (IF: 3.73).

  • S.K. Chong, M.S. Mohamad, A.H.M. Salleh, Y.W. Choon, C.K. Chong, S. Deris, A Hybrid of Ant Colony Optimization and Minimization of Metabolic Adjustment to Improve the Production of Succinic Acid in Escherichia Coli, Computers in Biology and Medicine Journal, Vol. 49, (2014), pp. 74-89, Elsevier Limited. (IF: 1.162).

  • C.K. Chong, M.S. Mohamad, S. Deris, M.S. Shamsir, A. Abdullah, An Improved Differential Evolution Algorithm for Enhancing Biochemical Pathways Simulation and Production, Int. J. Data Mining and Bioinformatics, Vol. 10, No. 4, (2014), pp. 424-439. Inderscience. (IF: 0.655).

  • M.F. Misman, M.S. Mohamad, S. Deris, S.Z.M. Hashim, A Group-Specific Tuning Parameter for Hybrid of SVM and SCAD in Identification of Informative Genes and Pathways, International Journal of Data Mining and Bioinformatics (IJDMB), Vol. 10, No. 2, (2014), pp. 146-160, Inderscience. (IF: 0.393).

  • Y.W. Choon, M.S. Mohamad, S. Deris, R.M. Illias, A Hybrid of Bees Algorithm and Flux Balance Analysis (BAFBA) for the Optimization of Microbial Strains, International Journal of Data Mining and Bioinformatics (IJDMB), Vol. 10, No. 2, (2014), pp. 225-238, Inderscience. (IF: 0.655).

  • L.E. Chai, S.K. Loh, S.T. Low, M.S. Mohamad, S. Deris, Z. Zakaria, A Review on the Computational Approaches for Gene Regulatory Network Construction, Computers in Biology and MedicineVol. 48, (2014), pp 55-65. Indexed by ISI & Scopus. Top 5 (No. 3) downloaded article in Computers in Biology and Medicine on 2014. (IF: 1.162).

  • Moorthy, M.S. Mohamad, S. Deris, A Review on Missing Value Imputation Algorithms for Microarray Gene Expression Data, Current Bioinformatics, Vol. 9, No. 1, (2014), pp. 18-22, Bentham Science. (IF: 2.017).

  • C.K. Chong, M.S. Mohamad, S. Deris, M.S. Shamsir, L.E. Chai, Y.W. Choon, Parameter Estimation by Using an Improved Bee Memory Differential Evolution Algorithm (IBMDE) to Simulate Biochemical Pathways, Current Bioinformatics, Vol. 9, No. 1, (2014), pp. 65-75, Bentham Science. (IF: 2.017).

  • C.K. Chong, M.S. Mohamad, S. Deris, M.S. Shamsir, Y.W. Choon, L.E. Chai, Using an Improved Bee Memory Differential Evolution Algorithm for Parameter Estimation to Simulate Biochemical Pathways, Journal of Biological Systems, Vol. 22, No.1, (2014), pp. 101-121, World Scientific Publishing. (IF: 0.734).

  • Y.W. Choon, M.S. Mohamad, S. Deris, R.M. Illias, C.K. Chong, L.E. Chai, A Hybrid of Bees Algorithm and Flux Balance Analysis with OptKnock as a Platform for In Silico Optimization of Microbial Strains, Bioprocess and Biosystems Engineering, Vol. 37, No. 3, (2014), pp. 521-532, Springer Verlag. (IF: 1.869).

  • L.H. Yin, Y.W. Choon, M.S. Mohamad, L.E. Chai, C.K. Chong, A. Abdullah, S. Deris, R.M. Illias, Prediction of Vanillin and Glutamate Productions in Yeast Using a Hybrid of Continuous Bees Algorithm and Flux Balance Analysis (CBAFBA), Current Bioinformatics, Vol. 9, No. 3, (2014), pp. 284-294, Bentham Science. (IF: 2.017).

  • N.A.A. Aziz, M. Mubin, M.S. Mohamad, K.A. Aziz, A Synchronous-Asynchronous Particle Swarm Optimisation Algorithm, The World Scientific Journal, Vol. 2014, 17 pages, (2014), Hindawi. (IF: 1.73).

  • C.L. Koo, M.J. Liew, M.S. Mohamad, A.H.M. Salleh, A Review for Detecting Gene-Gene Interactions using Machine Learning Methods in Genetic Epidemiology, BioMed Research International, Vol. 2013, (2013), pp. 1-13, Hindawi. (IF: 2.706).

  • M.S. Mohamad, S. Omatu, S. Deris, M. Yoshioka, A. Abdullah, Z. Ibrahim, An Enhancement of Binary Particle Swarm Optimization for Gene Selection in Classifying Cancer Classes, Algorithms for Molecular Biology, Vol. 8, (2013), No. 1, pp. 1-11, BioMed Central. (IF: 1.606).

  • Abdullah, S. Deris, M.S. Mohamad, S. Anwar, An Improved Swarm Optimization for Parameter Estimation and Biological Model Selection, PLoS ONE, Vol. 8, No. 4, (2013), pp. e61258, Public Library of Science. (IF: 3.73).

  • W.H. Chan, M.S. Mohamad, S. Deris, R. M. Illias, A Review of Computational Approaches for In Silico Metabolic Engineering for Microbial Fuel Production, Current Bioinformatics, Vol. 8, No. 2, (2013), pp. 253-258, Bentham Science. (IF: 2.017).

  • M.S. Mohamad, S. Omatu, S. Deris, M. Yoshioka, A Modified Binary Particle Swarm Optimization for Selecting the Small Subset of Informative Genes from Gene Expression Data, IEEE Transactions on Information Technology in Biomedicine, Vol. 15, No. 6, (2011), pp. 813–822, IEEE. (IF: 1.707).

  • M.S. Mohamad, S. Omatu, M. Yoshioka, S. Deris, A Three-Stage Method to Select Informative Genes for Cancer Classification, International Journal of Innovative Computing, Information and Control, Vol. 6, No.1, (2010), pp. 117-125, IJICIC Editorial Office. (IF: 2.932).

  • M.S. Mohamad, S. Omatu, M. Yoshioka, S. Deris, A Two-Stage Method to Select a Smaller Subset of Informative Genes for Cancer Classification, International Journal of Innovative Computing, Information and Control, Vol. 5, No. 10(A), (2009), pp. 2959-2968, IJICIC Editorial Office. (IF: 2.791).

  • M.S. Mohamad, S. Omatu, M. Yoshioka, S. Deris, A Cyclic Hybrid Method to Select a Smaller Subset of Informative Genes for Cancer Classification, International Journal of Innovative Computing, Information and Control, Vol. 5, No. 8, (2009), pp. 2189-2202, IJICIC Editorial Office. (IF: 2.791).

  • M.S. Mohamad, S. Omatu, S. Deris, M. Yoshioka, Three-Stage Method for Selecting Informative Genes for Cancer Classification, IEEJ Transactions on Electrical and Electronic Engineering, Vol. 4, No. 6, (2009), pp. 725-730, John Wiley and Sons. (IF: 0.302).

 

 

 

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