• S. Seah, S. Kasim, M.F.M. Fudzee, M.S. Mohamad, R.R. Saedudin, R. Hassan, M.A. Ismail, R. Atan. An Effective Pre-Processing Phase for Gene Expression Classification. Indonesian Journal of Electrical Engineering and Computer Science, Vol. 11, No. 3, (In Press). Institute of Advanced Engineering and Science.
  • A. Nasarudin, W.H. Chan, M.S. Mohamad, S. Deris, S. Napis, S. Kasim. Pathway-based Analysis with Support Vector Machine (SVM-LASSO) for Gene Selection and Classification. International Journal on Advanced Science, Engineering and Information Technology, Vol. 7, No. 4-2, pp.1609-1641, (2017), Indonesian Society for Knowledge and Human Development.
  • N. Mohd Hasri, H.W. Nies, W.H. Chan, M.S. Mohamad, S. Deris, S. Kasim. Improved Support Vector Machine using Multiple SVM-RFE for Cancer Classification. International Journal on Advanced Science, Engineering and Information Technology, Vol. 7, No. 4-2, pp.1589-1594, (2017), Indonesian Society for Knowledge and Human Development.
  • Mohammad Kusairi, K. Moorthy, H. Haron, M.S. Mohamad, S. Napis, S. Kasim. An Improved Parallelized mRMR for Gene Subset Selection in Cancer Classification. International Journal on Advanced Science, Engineering and Information Technology, Vol. 7, No. 4-2, pp.1595-1600, (2017), Indonesian Society for Knowledge and Human Development.
  • Muhamad, A. Abu Samah, H. Abdul Majid, G. Sulong, M.S. Mohamad, S. Kasim. Review on Local Binary Patterns Variants as Texture Descriptors for Copy-Move Forgery Detection. International Journal on Advanced Science, Engineering and Information Technology, Vol. 7, No. 5, pp.1678-1684, (2017), Indonesian Society for Knowledge and Human Development.
  • Z.M. Azmi, Z.Ibrahim, D.Pebrianti, & M.S. Mohamad. Simultaneous Computation of Model Order and Parameter Estimation for Arx Model Based on Single Swarm and Multi Swarm Simulated Kalman Filter. Journal of Telecommunication, Electronic and Computer Engineering (JTEC), Vol 9, No 1-3, (2017), pp. 151-155. UTeM.
  • A. Ismail, V. Mezhuyev, S. Deris, M.S. Mohamad, S. Kasim, R.R. Saedudin. Multi-objective Optimization of Biochemical System Production Using an Improve Newton Competitive Differential Evolution Method. International Journal on Advanced Science, Engineering and Information Technology, Vol. 7, No. 4-2, pp.1535-1542, (2017), Indonesian Society for Knowledge and Human Development.
  • S. Seah, S. Kasim, M.S. Mohamad. Specific Tuning Parameter for Directed Random Walk Algorithm For Cancer Classification. International Journal on Advanced Science, Engineering and Information Technology, Vol. 7, No. 1, pp.176-182, (2017), Indonesian Society for Knowledge and Human Development.
  • F. Arieef, S. Kasim, Y.W. Choon, M.S. Mohamad, S. Deris, S. Napis. A Hybrid of Integer Differential Bees and Flux Balance Analysis for Improving Succinate and Lactate Production. International Journal on Advanced Science, Engineering and Information Technology, Vol. 7, No. 4-2, pp.1615-1620, (2017), Indonesian Society for Knowledge and Human Development.
  • Ibrahim, N.H.A. Aziz, N.A.A. Aziz, S. Razali, M.S. Mohamad. Simulated Kalman Filter: A Novel Estimation-Based Metaheuristic Optimization Algorithm. Advanced Science Letters, Vol 22, (2016), pp.2941-2946. American Scientific Publishers.
  • N. Aliman, K.H. Abas, M.S. Najib, N.A.A. Aziz, M.S. Mohamad, Z. Ibrahim. Gravitational Search Algorithm: R Is Better Than R2?.  ARPN Journal of Engineering and Applied Sciences, Vol. 11, No. 7, (2016), pp. 4904-4910. Asian Research Publishing Network (ARPN).
  • H. Chan, M.S. Mohamad, S Deris, J.M. Corchado, S. Omatu, Z. Ibrahim, S. Kasim. An improved gSVM-SCADL2 with firefly algorithm for identification of informative genes and pathways. International Journal of Bioinformatics Research and Applications, Vol. 12, No. 1, (2016), pp. 72-93. InderScience Publisher.
  • H. Azhar, M.S. Mohamad, S. Deris, S. Napis, R. Sinnott. A Hybrid of Ant Colony Optimization and Flux Variability Analysis to Improve the Production of L-Phenylalanine and Biohydrogen. International Journal of Advances in Soft Computing & Its Applications, Vol. 8, No. 2, (2016), pp. 161-180. UTM.
  • M. Yusof, Z. Ibrahim, I. Ibrahim, K.Z.M. Azmi, N.A.A Aziz, N.H.A. Aziz, M.S. Mohamad. Angle Modulated Simulated Kalman Filter Algorithm For Combinatorial Optimization Problems. ARPN Journal of Engineering and Applied Sciences, Vol. 11, No. 7, (2016), pp. 4854-4859. Asian Research Publishing Network (ARPN).
  • M. Yusof, Z. Ibrahim, I. Ibrahim, K.Z.M. Azmi, N.A.A. Aziz, N.H.A. Aziz, M.S. Mohamad. Distance Evaluated Simulated Kalman Filter For Combinatorial Optimization Problems. ARPN Journal of Engineering and Applied Sciences, Vol. 11, No. 7, (2016), pp.4911-4916. Asian Research Publishing Network (ARPN).
  • J. Liew, A.H.M. Salleh, M.S. Mohamad, Y.W. Choon, S. Deris, A.A. Samah, H.A. Majid. In Silico Gene Deletion of Escherichia Coli For Optimal Ethanol Production Using A Hybrid Algorithm of Particle Swarm Optimization And Flux Balance Analysis. Jurnal Teknologi, Vol. 78, No. 12-3, (2016), pp. 181-187. UTM Press.
  • W. Tang, P.S. Chua, S.K. Chong, M.S. Mohamad, Y. W. Choon, S. Deris, S. Omatu, J.M. Corchado, W.H. Chan, R. Abdul Rahim. A Review of Gene Knockout Strategies for Microbial Cells. Recent Patents on Biotechnology, Vol. 9, No. 3, (2015), pp.176-197, Bentham Science.
  • Ibrahim, K.S. Lim, S. Buyamin, S.N. Satiman, M.H. Suib, B. Muhammad, M.R. Ghazali, M.S. Mohamad, J. Watada, MLPSO: Multi-Leader Particle Swarm Optimization for Multi-Objective Optimization Problems, ARPN Journal of Engineering and Applied Sciences, Vol. 10, No. 23, (2015), pp. 17533-17538, Asian Research Publishing Network (ARPN).
  • Ibrahim, M.I. Shapiai, S.N. Satiman, M.S. Mohamad, N.W. Arshad, A Complete Investigation of Using Weighted Kernel Regression for the Case of Small Sample Problem with Noise, ARPN Journal of Engineering and Applied Sciences, Vol. 10, No. 23, (2015), pp. 17514-17520, Asian Research Publishing Network (ARPN).
  • Muhammad, Z. Ibrahim, K.H. Ghazali, K.Z.M. Azmi, N.A.A. Aziz, N.H.A. Aziz, M.S. Mohamad, A New Hybrid Simulated Kalman Filter and Particle Swarm Optimization for Continuous Numerical Optimization Problems, ARPN Journal of Engineering and Applied Sciences, Vol. 10, No. 22, (2015), pp. 17171-17176, Asian Research Publishing Network (ARPN).
  • Ibrahim, N.H.A. Aziz, N.A.A. Aziz, S. Razali, M.I. Shapiai, S.W. Nawawi, M.S. Mohamad. A Kalman filter approach for solving unimodal optimization problems, ICIC Express Letters, Vol. 9, No.12, (2015), pp. 3415-3422, ICIC Express Letters Office.
  • Y. Man, M.S. Ong, M.S. Mohamad, S. Deris, G. Sulong, J. Yunus, F.K. Che Harun. A Review on the Bioinformatics Tools for Neuroimaging, Malaysian Journal of Medical Sciences, Vol. 22, (2015), pp. 8-18, Malaysian Journal of Medical Sciences.
  • A. Ismail, S. Deris, M.S. Mohamad, A. Abdullah, M.A. Remli, S.M. Mohi-Aldeen. A Hybrid of Optimization Method for Multi-Objective Constraint Oprimization of Biochemical System Production, Journal of Theoritical and Applied Information Technology, Vol. 81, No. 3, (2015), pp. 502-513, Asian Research Publishing Network (ARPN).
  • S. Tan, W.S. Ting, S. Kasim, M.S. Mohamad, W.H. Chan, S. Deris, Z. Zakaria, Z.A Shah, Z. Ibrahim. A Review of Cancer Classification Software for Gene Expression Data, International Journal of Bio-Sciences and Bio-Technology (IJBSBT), Vol. 7, No. 4, (2015), pp. 89-108, Science and Engineering Research Support Society.
  • A. Remli, S. Deris, M. Jamous, M.S. Mohamad, A. Abdullah. Web Services Composition for Concurrent Plan Using Artificial Intelligence Planning, Journal of Theoretical and Applied Information Technology, Vol. 78, No. 2, (2015), pp. 228-235, Little Lion Scientific Islamabad Pakistan.
  • K. Loh, S.T. Low, M.S. Mohamad, S. Deris, S. Kasim, Y.W. Choon, Z. Ibrahim, B. Susilo, Y. Hendrawan, A.K. Wardani. A Review of Software for Predicting Gene Function, International Journal of Bio-Sciences and Bio-Technology (IJBSBT), Vol. 7, No. 2, (2015), pp. 57-70, Science and Engineering Research Support Society.
  • X. Yeoh, C.K. Chong, Y.W. Choon, L.E. Chai, S. Deris, R.M. Illias, M.S. Mohamad. Parameter Estimation Using Improved Differential Evolution (IDE) and Bacterial Foraging Algorithm to Model Tyrosine Production in Mus Musculus (Mouse), Jurnal Teknologi, Vol. 72, No. 1, (2015), pp. 49-56, UTM Press.
  • Fotoohifiroozabadi, S. Deris, M.S. Mohamad, J. Razmara, A Review on Linear Encoding Methods and Geometry Based Methods for Protein Structure Alignment, Life Science Journal, Vol. 11, No. 3s, (2014), pp. 202-206, Marsland Press.
  • A. Ismail, S. Deris, M.S. Mohamad, A. Abdullah, A Hybrid of Newton Method and Genetic Algorithm for Constrained Optimization Method of the Production of Metabolic Pathway, Life Science Journal, Vol. 11, No. 9s, (2014), pp. 409-414, Marsland Press.
  • E. Chai, M.S. Mohamad, S. Deris, C. K. Chong, Y. W. Choon, S. Omatu, A Dynamic Bayesian Network-Based Model for Inferring Gene Regulatory Networks from Gene Expression Data, International Journal of Bio-Sciences and Bio-Technology (IJBSBT), Vol. 6, No. 1, (2014), pp. 41-52, Science and Engineering Research Support Society.
  • E. Chai, C.K. Law, M.S. Mohamad, C.K. Chong, Y.W. Choon, S. Deris, R.M. Illias, Investigating the Effects of Imputation Methods for Modelling Gene Networks Using a Dynamic Bayesian Network from Gene Expression Data, The Malaysian Journal of Medical Sciences: MJMS, Vol. 21, No. 2, (2014), pp. 20- 27. School of Medical Science publishers, USM.
  • H.A. Rashid, Y.W. Choon, M.S. Mohamad, L.E. Chai, C.K. Chong, S. Deris, R.M. Illias, Producing Succinic Acid in Yeast Using a Hybrid of Differential Evolution and Flux Balance Analysis, International Journal of Bio-Sciences and Bio-Technology (IJBSBT), Vol. 5, No. 6, (2013), pp. 91-100, Science and Engineering Research Support Society.
  • H.M. Salleh, M.S. Mohamad, S. Deris, R.M. Illias, A Review on Pathway Analysis Software Based on Microarray Data Interpretation, International Journal of Bio-Sciences and Bio-Technology (IJBSBT), Vol. 5, No. 4, (2013), pp. 149-157, Science and Engineering Research Support Society.
  • Abdullah, S. Deris, M.S. Mohamad, A New Hybrid Bee Evolution Algorithm for Parameter Estimation in Biological Model, ICIC Express Letter Part B: Application, Vol. 4, No. 1, (2013), pp. 1-6, ICIC Express Letters Office.
  • F. Tee, M.S. Mohamad, S. Deris, A.A.M. Faudzi, M.S.A. Latiff, R. Sallehuddin, Validation of Hierarchical Gene Clusters Using Repeated Measurements, Jurnal Teknologi, Vol. 61, No. 1, (2013), pp. 7-12, Penerbit Universiti Teknologi Malaysia.
  • P. Chai, M.S. Mohamad, A Method to Construct Gene Regulatory Networks to Estimate and Calculate Time Delay, Jurnal Teknologi, Vol. 62, No. 1, (2013), pp. 25-31, Penerbit Universiti Teknologi Malaysia.
  • T. Ng, C.K. Chong, Y.W. Choon, L.E. Chai, S. Deris, R.M. Illias, M.S. Shamsir, M.S. Mohamad, Estimating Kinetic Parameters for Essential Amino Acid Production in Arabidopsis Thaliana by Using Particle Swarm Optimization, Jurnal Teknologi (Sciences and Engineering), Vol. 64, No. 1. (2013), pp. 73-80, Penerbit Universiti Teknologi Malaysia.
  • F.M. Saaid, S. Sudin, I. Ibrahim, Z.M. Yusof, K. Khalil, J.A.A. Mukred, M.S. Mohamad, N. Mokhtar, Z. Ibrahim, J. Watada, Automation of DNA Computing Readout Method Based on Real-Time PCR Implemented on DNA Engine Opticon 2 System, International Journal of Innovative Computing, Information and Control, Vol. 8, No. 3(A), (2012), pp. 1907-1916, IJICIC Editorial Office.
  • H. M. Salleh, M.S. Mohamad, Metabolic Pathway Extraction Using Combined Probabilistic Models, International Journal of Bio-Sciences and Bio-Technology (IJBSBT), Vol. 4, No. 2, (2012), pp. 1–10, Science and Engineering Research Support Society.
  • Ibrahim, N.K. Khalid, S. Buyamin, J. Abdulla, A. Mukred, Z.M. Yusof, M.S. Mohamad, K. Khalil, M.F.M. Saaid, N. Mokhtar, J. Watada, A. Engelbrecht, DNA Sequence Design for DNA Computation based on Binary Particle Swarm Optimization, International Journal of Innovative Computing, Information and Control, Vol. 8, No. 5(B), (2012), pp. 3341-3450, IJICIC Editorial Office.
  • K. Tan, M.S. Mohamad, Using Bayesian Networks to Construct Gene Regulatory Networks from Microarray Data, Jurnal Teknologi, Vol. 58, (2012), pp. 1-6, Penerbit Universiti Teknologi Malaysia.
  • Y. Fai, R. Hassan, M.S. Mohamad, Protein Secondary Structure Prediction Using Optimal Local Protein Structure Based SVM, International Journal of Bio-Sciences and Bio-Technology (IJBSBT), Vol. 4, No. 2, (2012), pp. 35–44, SERSC.
  • S. Mohamad, S. Omatu, S. Deris, M. Yoshioka, Z. Ibrahim, Selecting a Small Subset of Informative Genes from Gene Expression Data by Using a Modified Binary Particle Swarm Optimization, International Journal of Innovative Computing, Information and Control, Vol. 8, No. 6, (2012), pp. 4285-4297, IJICIC Editorial Office.
  • Yakop, Z. Ibrahim, A.F.Z. Abidin, Z.M. Yusof, M.S. Mohamad, K. Wan, J. Watada, An Ant Colony System for Solving DNA Sequence Design Problem in DNA Computing, International Journal of Innovative Computing, Information and Control, Vol. 8, No. 10B, (2012), pp. 7329-7339, IJICIC Editorial Office.
  • F. Misman, M.S. Mohamad, S. Deris, S.Z.M. Hashim, N. Leham, Z. Ibrahim, A Tuning Parameter Selector Method for the gSVM-SCAD in Determining Significant Genes and Biological Pathways, ICIC Express Letters, Vol. 6, No.4, (2012), pp. 851-856, ICIC Express Letters Office.
  • H. Shi, M.S. Mohamad, S. Deris, Z. Ibrahim, A Pathway-Based Approach for Analyzing Microarray Data using Random Forests, ICIC Express Letters (ICIC-EL), Vol. 6, No.5, (2012), pp. 1253-1257, ICIC Express Letters Office.
  • Moorthy, M.S. Mohamad, S. Deris, Z. Ibrahim, Multivariate Analysis of Gene Expression Data and Missing Value Imputation Based on LLSimpute Algorithms, ICIC Express Letters (ICIC-EL), Vol. 6, No.5, (2012), pp.1335-1339, ICIC Express Letters Office.
  • M. Yusof, A.F.Z. Abidin, A. Adam, K. Khalil, J.A.A Mukred, M.S. Mohamad, Z. Ibrahim, A Two-Step Binary Particle Swarm Optimization Approach for Routing in VLSI, ICIC Express Letters (ICIC-EL), Vol. 6, No.3, (2012), pp.771-776, ICIC Express Letters Office.
  • Ibrahim, S.A.R.S.A Bakar, M.M. Mokji, K. Khalil, Z.M. Yusof, J.A.A. Mukred, M.S. Mohamad, Z. Ibrahim, An Image Registration Technique to Enhance PCB Inspection Algorithm with Real Images, ICIC Express Letters (ICIC-EL), Vol. 6, No.3, (2012), pp. 717-722, ICIC Express Letters Office.
  • I. Shapiai, Z. Ibrahim, S. Sudin, M.S. Mohamad, M. Khalid, Investigation on Different Learning Techniques for Weighted Kernel Regression in Solving Small Sample Problem, ICIC Express Letters (ICIC-EL), Vol 6, No.3, (2012), pp. 705-710, ICIC Express Letters Office.
  • F. Misman, S. Deris, M.S. Mohamad, S.Z.M. Hashim, Identification of Significant Phenotypes Related Genes and Biological Pathways Using a Hybrid of Support Vector Machines and Smoothly Clipped Absolute Deviation, ICIC Express Letters, Part B: Applications (ICIC-ELB), Vol. 1, No. 2, (2010), pp. 131-136, ICIC Express Letters Office.
  • S. Mohamad, S. Omatu, S. Deris, M. Yoshioka, Particle Swarm Optimization with a Modified Sigmoid Function for Gene Selection from Gene Expression Data, Artificial Life and Robotics, Vol. 15, No. 1, (2010), pp. 21-24, Springer Japan.
  • S. Mohamad, S. Omatu, S. Deris, M. Yoshioka, Particle Swarm Optimization for Gene Selection in Classifying Cancer Classes, Artificial Life and Robotics, Vol. 14, No.1, (2009), pp. 16-19, Springer Japan.
  • S. Mohamad, S. Omatu, S. Deris, M. Yoshioka, Gene Subset Selection Using an Iterative Approach Based on Genetic Algorithms, Artificial Life and Robotics, Vol. 14, No.1, (2009), pp. 12-15, Springer Japan.
  • S. Mohamad, S. Omatu, S. Deris, M.F. Misman, M. Yoshioka, Selecting Informative Genes from Microarray Data by Using Hybrid Methods for Cancer Classification, Artificial Life and Robotics, Vol. 13, No. 2, (2009), pp. 414-417, Springer Japan.
  • S. Mohamad, S. Omatu, S. Deris, M.F. Misman, M. Yoshioka, A Multi-Objective Strategy in Genetic Algorithm for Gene Selection of Gene Expression Data, Artificial Life and Robotics, Vol. 13, No. 2, (2009), pp. 410-413, Springer Japan.
  • S. Mohamad, S. Omatu, S. Deris, S.Z.M. Hashim, A Model for Gene Selection and Classification of Gene Expression Data, Artificial Life and Robotics, Vol. 11, No. 2, (2007), pp. 219-222, Springer Japan.

 

 

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